| Name | Version | Summary | date |
| cpg-flow |
0.1.0 |
CPG Flow API for Hail Batch |
2025-01-28 04:26:16 |
| ga4gh.cat-vrs |
0.2.1 |
GA4GH Categorical Variation Representation (Cat-VRS) reference implementation |
2025-01-23 18:59:11 |
| varscore |
0.0.1a0 |
A library for common functions in variant effect prediction & prioritization. |
2025-01-17 23:39:08 |
| cogent3 |
2024.12.19a2 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-01-17 00:49:59 |
| FinaleToolkit |
0.10.6 |
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data. |
2025-01-15 14:43:53 |
| prymer |
3.0.0 |
Python primer design library |
2025-01-14 20:05:47 |
| pyfastani |
0.6.1 |
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation. |
2025-01-12 04:32:14 |
| phylim |
2025.1.12 |
A library for checking the limits of phylogenetic tree estimation. |
2025-01-12 02:03:20 |
| ghfc-utils |
0.0.12 |
Various genomics tools and scripts used in the GHFC lab |
2025-01-09 12:23:28 |
| pandaspgs |
0.2.0 |
A Python package for easy retrieval of PGS Catalog data |
2025-01-09 07:35:00 |
| somaticseq |
3.10.0 |
SomaticSeq: An ensemble approach to accurately detect somatic mutations using SomaticSeq |
2025-01-01 23:58:14 |
| rsbio-seq |
0.1.5 |
RSBio-Seq is a fast and light-weight sequence reading library (built on top of rust bio crate). |
2024-12-31 00:43:20 |
| diverse-seq |
2024.12.26a1 |
diverse_seq: a tool for sampling diverse biological sequences |
2024-12-26 03:33:53 |
| pygenomeviz |
1.5.0 |
A genome visualization python package for comparative genomics |
2024-12-21 02:44:56 |
| cooler |
0.10.3 |
Sparse binary format for genomic interaction matrices. |
2024-12-21 02:13:17 |
| singlecell-cookbook |
0.3.1 |
A collection of tools for analyzing single-cell genomics data. |
2024-12-19 00:53:42 |
| CNSistent |
0.7.1 |
Tools for imputation, segmentation, analysis, and plotting of Copy Number Segments (CNS). |
2024-12-16 23:53:45 |
| odm-sdk |
1.59.4 |
SDK for interacting with the Open Data Manager |
2024-12-10 17:19:12 |
| genepioneer |
1.0.3 |
A Python package for identifying essential genes in cancer. |
2024-12-08 15:26:13 |
| pyskani |
0.1.3 |
PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining. |
2024-12-05 15:19:32 |