| Name | Version | Summary | date |
| genepattern-notebook |
25.7 |
GenePattern Notebook extension for JupyterLab |
2025-07-25 16:26:49 |
| cogent3 |
2025.7.10a4 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-07-25 07:19:38 |
| ga4gh.va-spec |
0.4.1 |
GA4GH Variant Annotation (VA) reference implementation |
2025-07-24 22:25:10 |
| alphagenome-pytorch |
0.1.0 |
AlphaGenome |
2025-07-24 03:38:42 |
| phylim |
2025.7.24 |
A library for checking the limits of phylogenetic tree estimation. |
2025-07-24 00:24:08 |
| cooler |
0.10.4 |
Sparse binary format for genomic interaction matrices. |
2025-07-21 23:54:45 |
| akita-torch |
0.1.0 |
Pytorch implementation of Akita model for Hi-C prediction from DNA sequence |
2025-07-18 04:37:00 |
| pyxfr |
0.6.4 |
The Transferase Python API |
2025-07-18 04:11:15 |
| torchakita |
0.1.1 |
Pytorch implementation of Akita model for Hi-C prediction from DNA sequence |
2025-07-18 00:17:19 |
| mutation-motif |
2025.7.17 |
mutation_motif, software for analyses of point mutations, see https://www.ncbi.nlm.nih.gov/pubmed/27974498 |
2025-07-16 23:25:09 |
| hgvs |
1.5.5 |
HGVS Parser, Formatter, Mapper, Validator |
2025-07-14 00:13:27 |
| audreylab-gwas-postqc |
0.1.0 |
A lightweight tool for performing post-GWAS QC on Regenie outputs. |
2025-07-13 13:23:00 |
| pyranges1 |
1.1.1 |
GenomicRanges for Python. |
2025-07-12 20:47:20 |
| cogent3-h5seqs |
0.5.0 |
HDF5 storage driver for cogent3 sequence collections |
2025-07-10 06:30:06 |
| checkamg |
0.3.2 |
Automated identification and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) in viral genomes. |
2025-07-09 20:32:26 |
| bacformer |
0.1.0 |
Modeling bacterial genomes. |
2025-07-08 16:22:51 |
| gene-fetch |
1.0.13 |
Gene Fetch: High-throughput NCBI Sequence Retrieval Tool |
2025-07-08 09:50:55 |
| ga4gh.vrs |
2.0.0 |
GA4GH Variation Representation Specification (VRS) reference implementation |
2025-03-21 20:20:38 |
| mhctyper |
0.1.3 |
MHC Class I and II typer based on polysolver algorithm. |
2025-02-26 19:32:51 |
| ghfc-utils |
0.1.13 |
Various genomics tools and scripts used in the GHFC lab |
2025-02-21 23:08:19 |